2026-09-25T00:52:18Zhttps://univendspace.univen.ac.za/server/oai/requestoai:univendspace.univen.ac.za:11602/9172024-09-10T14:47:35Zcom_11602_1926com_11602_1914com_11602_1897com_11602_737col_11602_2146col_11602_738
Amidou, Samie
Mbati, Peter A.
Hlungwani, Hasani Alone
2017-10-30T05:14:02Z
2017-10-30T05:14:02Z
2017-09-18
Hlungwani, H.A. 2017. Molecular detection and identification of Cryptosporidium species isolated from human and animal sources in Limpopo and Gauteng Provinces. . . http://hdl.handle.net/11602/917
http://hdl.handle.net/11602/917
Hlungwani HA. Molecular detection and identification of Cryptosporidium species isolated from human and animal sources in Limpopo and Gauteng Provinces. []. , 2017 [cited yyyy month dd]. Available from: http://hdl.handle.net/11602/917
Hlungwani, H. A. (2017). <i>Molecular detection and identification of Cryptosporidium species isolated from human and animal sources in Limpopo and Gauteng Provinces</i>. (). . Retrieved from http://hdl.handle.net/11602/917
Hlungwani, Hasani Alone. <i>"Molecular detection and identification of Cryptosporidium species isolated from human and animal sources in Limpopo and Gauteng Provinces."</i> ., , 2017. http://hdl.handle.net/11602/917
TY - Dissertation
AU - Hlungwani, Hasani Alone
AB - Background: Diarrheal diseases constitute an important problem among children but also
among HIV positive patients particularly in developing countries such as South Africa.
Cryptosporidium infect humans and has been shown to be an important cause of infection
among different types of animals. Because of its small size, Cryptosporidium can easily go
through the water purification system and can easily become a cause of an epidemic.
Previous studies have shown that Cryptosporidium is an important cause of diarrhea in
Limpopo Province. However, very few studies have been conducted on the genetic diversity
of these organisms in the region. Therefore, the aim of this study was to detect and identify
the genetic diversity of Cryptosporidium species from humans and animals in Giyani situated
in the northern part of South Africa and Pretoria situated in the central part of the country.
Methodology: A total of 560 samples were collected from human and animals and were all
screened by microscopy using modified Ziehl-Neelsen staining technique. All the samples
were tested by Enzyme-Linked Immunosorbent Assay (ELISA) using the Cryptosporidium II
kits from Techlab, Virginia, USA. Positive samples from microscopy and ELISA were
examined by different PCR protocols including conventional PCR for amplification of
Cryptosporidium oocyst wall protein (COWP) region; Real-time PCR employing SYBR
Green detection format for amplification of 18S rRNA region; Real-time PCR employing
Hydrolysis probes detection format for amplification of SSU rRNA region; Real-time PCR
specific for amplification of C. hominis region and C. parvum region. Positive samples from
real-time PCR that gave clear bands on gel electrophoresis were sent for sequencing. The
sequences were analysed using Staden package software to edit the nucleotides, Bioedit and
MEGA6 software were used to align sequences and draw phylogenetic trees. The SPSS
software was used for statistical analysis.
xiii
Results: The overall prevalence of Cryptosporidium as detected by ELISA method from the
samples collected from humans was 41.2% (239/580). The prevalence was higher from the
rural area 73.0% (159/218) compared to the urban area 22.1% (80/362) and the difference
was statistically significant (χ2 = 145.1; p = 0.0001). Due to the limited amount of samples,
only 134 ELISA-positive samples were tested using real-time PCR. Of these samples, 35.8%
(48/134) tested positive. Of 48 real-time positive samples 25 were successfully sequenced
and two different species (C. hominis and C. muris) were identified. Of all the sequences
obtained, one (4.0%) was C. muris and 20 (80%) were C. hominis isolated from rural area,
whereas 16.0% (4/25) were also C. hominis isolated from samples obtained from urban area.
Cryptosporidium was not associated with diarrhea in the present study.
A total of 85 samples were collected from animals (52 from cattle and 33 from goats) and of
these 4 (4.7%) were positive by microscopy and ELISA. All these samples were non
diarrheal. Conventional PCR also detected a similar number. Of these 4 positive samples, 1
was from a male goat, while the 3 others were obtained from female adult goats.
Real-time PCR detected 56.5% (48/85) positive samples. Only 12 of the 85 animal samples
were diarrheal and of these 4 were positive for Cryptosporidium. The prevalence of
Cryptosporidium infection was higher 68.4% (13/19) in male animals compared to female
animals 53.0% (35/66). The prevalence rates in cattle and goats were 55.8% (29/52) and
60.6% (20/33) respectively.
Of 48 real-time positive samples from animals, 12 (25.0%) were successfully sequenced and
two species (C. parvum and C. andersoni) were identified. Of these 6 were from cattle and
the other 6 were from goats. Out of the 12 samples 10 (83%) were C. parvum while 2 (17%)
were C. andersoni. Of the two C. andersoni, one was from a goat and one was from a cow.
Of the 10 C. parvum, 5 were from goats and 5 were from cattle.
xiv
In conclusion, microscopy remains the low sensitive tool for the detection of
Cryptosporidium while real time PCR appeared to be far much more sensitive by detecting
more samples than all the three other methods combined. Closer to the real time PCR was
ELISA that detected also more samples compared to conventional PCR and microscopy.
The present study identified C. muris from humans’ samples in our area for the first time.
However, C. hominis remains the dominant species that infects humans in our area.
Cryptosporidium species was mostly found in samples from asymptomatic individuals. In
animals, C. parvum was the most commonly isolated organism while C. andersoni was
identified in our region for the first time as well and occurred in both goats and cattle.
Populations in the affected areas need to be made aware of the infections so that care should
be taken to avoid the spread of infection in water sources or in immunocompromised
individuals.
DA - 2017-09-18
DB - ResearchSpace
DP - Univen
KW - Cryptosporidium
KW - Detection
KW - Identification
KW - Isolates
KW - ELISA
KW - PCR
LK - https://univendspace.univen.ac.za
PY - 2017
T1 - Molecular detection and identification of Cryptosporidium species isolated from human and animal sources in Limpopo and Gauteng Provinces
TI - Molecular detection and identification of Cryptosporidium species isolated from human and animal sources in Limpopo and Gauteng Provinces
UR - http://hdl.handle.net/11602/917
ER -
MSc (Microbiology)
Department of Microbiology
Background: Diarrheal diseases constitute an important problem among children but also
among HIV positive patients particularly in developing countries such as South Africa.
Cryptosporidium infect humans and has been shown to be an important cause of infection
among different types of animals. Because of its small size, Cryptosporidium can easily go
through the water purification system and can easily become a cause of an epidemic.
Previous studies have shown that Cryptosporidium is an important cause of diarrhea in
Limpopo Province. However, very few studies have been conducted on the genetic diversity
of these organisms in the region. Therefore, the aim of this study was to detect and identify
the genetic diversity of Cryptosporidium species from humans and animals in Giyani situated
in the northern part of South Africa and Pretoria situated in the central part of the country.
Methodology: A total of 560 samples were collected from human and animals and were all
screened by microscopy using modified Ziehl-Neelsen staining technique. All the samples
were tested by Enzyme-Linked Immunosorbent Assay (ELISA) using the Cryptosporidium II
kits from Techlab, Virginia, USA. Positive samples from microscopy and ELISA were
examined by different PCR protocols including conventional PCR for amplification of
Cryptosporidium oocyst wall protein (COWP) region; Real-time PCR employing SYBR
Green detection format for amplification of 18S rRNA region; Real-time PCR employing
Hydrolysis probes detection format for amplification of SSU rRNA region; Real-time PCR
specific for amplification of C. hominis region and C. parvum region. Positive samples from
real-time PCR that gave clear bands on gel electrophoresis were sent for sequencing. The
sequences were analysed using Staden package software to edit the nucleotides, Bioedit and
MEGA6 software were used to align sequences and draw phylogenetic trees. The SPSS
software was used for statistical analysis.
xiii
Results: The overall prevalence of Cryptosporidium as detected by ELISA method from the
samples collected from humans was 41.2% (239/580). The prevalence was higher from the
rural area 73.0% (159/218) compared to the urban area 22.1% (80/362) and the difference
was statistically significant (χ2 = 145.1; p = 0.0001). Due to the limited amount of samples,
only 134 ELISA-positive samples were tested using real-time PCR. Of these samples, 35.8%
(48/134) tested positive. Of 48 real-time positive samples 25 were successfully sequenced
and two different species (C. hominis and C. muris) were identified. Of all the sequences
obtained, one (4.0%) was C. muris and 20 (80%) were C. hominis isolated from rural area,
whereas 16.0% (4/25) were also C. hominis isolated from samples obtained from urban area.
Cryptosporidium was not associated with diarrhea in the present study.
A total of 85 samples were collected from animals (52 from cattle and 33 from goats) and of
these 4 (4.7%) were positive by microscopy and ELISA. All these samples were non
diarrheal. Conventional PCR also detected a similar number. Of these 4 positive samples, 1
was from a male goat, while the 3 others were obtained from female adult goats.
Real-time PCR detected 56.5% (48/85) positive samples. Only 12 of the 85 animal samples
were diarrheal and of these 4 were positive for Cryptosporidium. The prevalence of
Cryptosporidium infection was higher 68.4% (13/19) in male animals compared to female
animals 53.0% (35/66). The prevalence rates in cattle and goats were 55.8% (29/52) and
60.6% (20/33) respectively.
Of 48 real-time positive samples from animals, 12 (25.0%) were successfully sequenced and
two species (C. parvum and C. andersoni) were identified. Of these 6 were from cattle and
the other 6 were from goats. Out of the 12 samples 10 (83%) were C. parvum while 2 (17%)
were C. andersoni. Of the two C. andersoni, one was from a goat and one was from a cow.
Of the 10 C. parvum, 5 were from goats and 5 were from cattle.
xiv
In conclusion, microscopy remains the low sensitive tool for the detection of
Cryptosporidium while real time PCR appeared to be far much more sensitive by detecting
more samples than all the three other methods combined. Closer to the real time PCR was
ELISA that detected also more samples compared to conventional PCR and microscopy.
The present study identified C. muris from humans’ samples in our area for the first time.
However, C. hominis remains the dominant species that infects humans in our area.
Cryptosporidium species was mostly found in samples from asymptomatic individuals. In
animals, C. parvum was the most commonly isolated organism while C. andersoni was
identified in our region for the first time as well and occurred in both goats and cattle.
Populations in the affected areas need to be made aware of the infections so that care should
be taken to avoid the spread of infection in water sources or in immunocompromised
individuals.
1 online resource (xiv, 73 leaves : color illustrations, color maps)
en
University of Venda
Cryptosporidium
Detection
Identification
Isolates
UCTD
ELISA
PCR
614.5934270968
Coccidia -- South Africa -- Limpopo
Coccidia -- South Africa -- Gauteng
Cryptosporidium -- South Africa -- Limpopo
Cryptosporidium -- South Africa -- Gauteng
Cryptosporidium parvum -- South Africa -- Limpopo
Cryptosporidium parvum -- South Africa -- Gauteng
Cryptosporidium infections -- South Africa -- Limpopo
Cryptosporidium infections -- South Africa -- Gauteng
Diarrhea in animals -- South Africa -- Limpopo
Diarrhea in animals -- South Africa -- Gauteng
Diarrhea in children -- South Africa -- Limpopo
Diarrhea in children -- South Africa -- Gauteng
HIV infections -- South Africa -- Limpopo
HIV infections -- South Africa -- Gauteng
HIV-positive oersons -- South Africa -- Limpopo
HIV-positive persons -- South Africa -- Gauteng
Molecular detection and identification of Cryptosporidium species isolated from human and animal sources in Limpopo and Gauteng Provinces
Dissertation
open.access